When I get my new bike each year or two, I pick the one off the floor with the least amount of vibration. I then run vibration dampners in the bars. When it's time to rebuilt the crank, the crank is trued. You will not believe the difference.
The first time we did this was on a bike 100% provided by a sponsor. Since we just had to take the bike that was delivered, we found that the vibration was so bad, your eyes were sore after a long ride (true statement). We pulled the motor and crank, and had it trued (by the Honda shop, as they have the best mechanic in the state). What a difference!!

After that experience, all cranks are trued on rebuild. Also, if I ever get another bike that has to much vibration on delivery, I would split the cases first thing. If you can pull the crank yourself, it really should not cost much at all.
Good luck.
Rick